|
|
 |
 |
 |
 |
 |
|
 |
|
|
Representation of repetitive element groups on 1RS, modified after Bartos et al. 2008 (453)
|
|
|
|
|
|
Cumulative length (bp)
|
Fraction of 1RS (%)
|
|
Class I elements
|
|
|
1,306,781
|
64.3
|
|
|
LTR retrotransposons
|
|
1,275,443
|
62.8
|
|
|
|
Gypsy
|
989,195
|
48.7
|
|
|
|
Copia
|
281,937
|
13.9
|
|
|
|
TRIM
|
281,937
|
13.9
|
|
|
Non-LTR retrotransposons
|
|
31,338
|
1.5
|
|
|
|
LINE
|
23,400
|
1.2
|
|
|
|
SINE
|
1,877
|
0.1
|
|
Class II elements
|
|
|
100,854
|
5.0
|
|
|
|
CACTA
|
90,323
|
4.4
|
|
|
|
Mutator
|
1,394
|
0.1
|
|
|
|
MITE
|
4,681
|
0.2
|
|
|
|
LITE
|
2,753
|
0.1
|
|
Unclassified elements
|
|
|
30,340
|
1.5
|
|
Other known repeats
|
|
|
106,376
|
5.2
|
|
|
Ribosomal genes
|
|
94,665
|
4.7
|
|
|
Simple repeats
|
|
5,049
|
0.2
|
|
|
Tandem repeats
|
|
6,662
|
0.3
|
|
Known repeats
|
|
|
1,536,587
|
75.6
|
|
Unknown repeats
|
|
|
178,027
|
8.8
|
|
Total
|
|
|
1,712,364
|
84.2
|
|
|
|
|
 |
|
|
|
rolf.schlegel@t-online.de Copyright by R. Schlegel & V. Korzun 2006 2007 2008 2009 2010 korzun@lochow-petkus.de
|
|
|